miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|194659419|gb|FK928133.1|FK928133 GCCCTGTCTTTATTATTATTATTACTTTTGTCACATATCATAAAGGCACTTGTTGTAATTTCAATAATGAAATTGTGTTT
TTTTTAAATTAATGAACAGGAATTGAGACTGATATCTCCACTCGTCATTTCTGGCTCAATTTCCAATGGTTTGCTCTCAA
TAACAATATTCCTCATACATCCTACGTAGTCATGCTGAGTTGAAAGACCTCTTAGTCTTCTCTTCTTGGGATGTCCACCT
ATATATAAACCGTGGTTAGTGTCCGTAGATGATACTCCAGGAACTCCGATGGCTGCTGGAGAAAATATTCCATCGACAGA
GACTGTGACAACGTTTTTCGCTTTTACAGCTTGAATACGATGCCACTTTCCATCACAGAGACTGAAAGTTGTTTTGGGTT
TAAAGCTACTAAAAATAGGCCCTCTTCCATTATCTGCGGCGAATTGTATTGCTCCGTCAATCATCTGGAGAATGAGATAG
TCCTTCCTACCCTGGATAGCTAAGAGTATACCAGAGATATTTCGAGGCTTAATGTCCATGTTAATATCAAAGTCCATTCC
AACGCGATACCTAGGTTGAACAAGAATATGCCCTCCCTTGGATCCAAAGAAACTTCCTTGTTCAACCATATCAGAGCAAG
CAATCACGCCATTACTGTTATTCTTACTCCATTTTCCGATTCGTTTTCGCCTGTGAATAAATTCTCTAAGACATCCCACA
AATCCAGTTGTAACCCTCATTAAGTTTCTTTGTACAGGCAACTCTTCTCTGAGTTCTTGTTTGATACCGCCCAGGAAAAG
TTCTGGAATTACATCCAAGTTTTGAGTATCTCCCTCTG




Most similar to sp|Q00174|LAMA_DROME

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q00174|LAMA_DROME Laminin subunit alpha OS=Drosophila melanogaster
            GN=LanA PE=1 SV=2
          Length = 3712

 Score =  133 bits (334), Expect = 2e-30
 Identities = 71/238 (29%), Positives = 122/238 (51%), Gaps = 1/238 (0%)
 Frame = -3

Query: 800  LFLGGIKQELREELPVQRNLMRVTTGFVGCLREFIHRRKRIGKWSKNNSNGVIACSDMVE 621
            ++LGG+ + L  E+    +       F GCL+    +   +   +     GV+ CS+ VE
Sbjct: 3476 IYLGGVNKFLESEVKNLTDFKTEVPYFNGCLKNI--KFDAMDLETPPEEFGVVPCSEQVE 3533

Query: 620  QGSFFGSKGGHILVQPRYRVGMDFDINMDIKPRNISGILLAIQGRKDYLILQMIDGAIQF 441
            +G FF ++   + +   + VG +  I+ D +PR+ +G+L ++ G+  Y IL+++D  + F
Sbjct: 3534 RGLFFNNQKAFVKIFDHFDVGTEMKISFDFRPRDPNGLLFSVHGKNSYAILELVDNTLYF 3593

Query: 440  AADNGRGPIFSS-FKPKTTFSLCDGKWHRIQAVKAKNVVTVSVDGIFSPAAIGVPGVSST 264
                    I S+ +K     S CDGK   +QA+K+K V+ ++VD I S   +G  G   T
Sbjct: 3594 TVKTDLKNIVSTNYKLPNNESFCDGKTRNVQAIKSKFVINIAVDFISSNPGVGNEGSVIT 3653

Query: 263  DTNHGLYIGGHPKKRRLRGLSTQHDYVGCMRNIVIESKPLEIEPEMTSGDISLNSCSL 90
             TN  L++GGH   +R  G+ T+  + GC+  + +  + + I P M  GDI    C L
Sbjct: 3654 RTNRPLFLGGHVAFQRAPGIKTKKSFKGCISKVEVNQRMINITPNMVVGDIWQGYCPL 3711